Cesar H. Comin Publications

This is a collection of articles by Prof. Cesar H. Comin. They are for indexing and archival purposes. The full text of some articles have been converted to Markdown from the original Latex or PDF files.

• A new dataset for measuring the performance of blood vessel segmentation methods under distribution shifts — Matheus Viana da Silva, Natália de Carvalho Santos, Julie Ouellette, Baptiste Lacoste, Cesar H. Comin — Plos One, 2025
• Artificial vascular image generation using blood vessel texture maps — Adriano dos Reis Carvalho, Matheus Viana da Silva, Cesar H. Comin — Computers in Biology and Medicine, 2024
• Astroglial Hmgb1 regulates postnatal astrocyte morphogenesis and cerebrovascular maturation — Moises Freitas-Andrade, Cesar H. Comin, Peter Van Dyken, Julie Ouellette, Joanna Raman-Nair, Nicole Blakeley, Qing Yan Liu, Sonia Leclerc, Youlian Pan, Ziying Liu, Micaël Carrier, Karan Thakur, Alexandre Savard, Gareth M. Rurak, Marie-Ève Tremblay, Natalina Salmaso, Luciano Da F. Costa, Gianfilippo Coppola, Baptiste Lacoste — Nature Communications, 2023
• Estimating the effects of urban green regions in terms of diffusion — Eric K Tokuda, Henrique F De Arruda, Guilherme S Domingues, Luciano Da F Costa, Florence As Shibata, Roberto M Cesar-Jr, Cesar H Comin — Environment and Planning B: Urban Analytics and City Science, 2023
• On the stability of citation networks — Alexandre Benatti, Henrique Ferraz De Arruda, Filipi Nascimento Silva, César Henrique Comin, Luciano Da Fontoura Costa — Physica A: Statistical Mechanics and its Applications, 2023
• Neonatal hyperoxia in mice triggers long-term cognitive deficits via impairments in cerebrovascular function and neurogenesis — Marissa A. Lithopoulos, Xavier Toussay, Shumei Zhong, Liqun Xu, Shamimunisa B. Mustafa, Julie Ouellette, Moises Freitas-Andrade, Cesar H. Comin, Hayam A. Bassam, Adam N. Baker, Yiren Sun, Michael Wakem, Alvaro G. Moreira, Cynthia L. Blanco, Arul Vadivel, Catherine Tsilfidis, Steven R. Seidner, Ruth S. Slack, Diane C. Lagace, Jing Wang, Baptiste Lacoste, Bernard Thébaud — Journal of Clinical Investigation, 2022
• Impact of the topology of urban streets on mobility optimization — Eric K Tokuda, Cesar H Comin, Luciano Da F Costa — Journal of Statistical Mechanics: Theory and Experiment, 2022
• An Analysis of the Influence of Transfer Learning When Measuring the Tortuosity of Blood Vessels — Matheus V. da Silva, Julie Ouellette, Baptiste Lacoste, Cesar H. Comin — Computer Methods and Programs in Biomedicine, 2022
• Learning Deep Learning — Henrique F. De Arruda, Alexandre Benatti, César Henrique Comin, Luciano Da F. Costa — Revista Brasileira de Ensino de Física, 2022
• Principal Component Analysis: A Natural Approach to Data Exploration — Felipe L. Gewers, Gustavo R. Ferreira, Henrique F. De Arruda, Filipi N. Silva, Cesar H. Comin, Diego R. Amancio, Luciano Da F. Costa — ACM Computing Surveys, 2022
• Unbiased analysis of mouse brain endothelial networks from two- or three-dimensional fluorescence images — Moises Freitas-Andrade, Cesar H. Comin, Matheus Viana Da Silva, Luciano Da F. Costa, Baptiste Lacoste — Neurophotonics, 2022
• Maternal high-fat diet in mice induces cerebrovascular, microglial and long-term behavioural alterations in offspring — Maude Bordeleau, Cesar H. Comin, Lourdes Fernández De Cossío, Chloé Lacabanne, Moises Freitas-Andrade, Fernando González Ibáñez, Joanna Raman-Nair, Michael Wakem, Mallar Chakravarty, Luciano Da F. Costa, Baptiste Lacoste, Marie-Ève Tremblay — Communications Biology, 2022
• Revisiting agglomerative clustering — Eric K. Tokuda, Cesar H. Comin, Luciano Da F. Costa — Physica A: Statistical Mechanics and its Applications, 2022
• Roads and forest edges facilitate yellow fever virus dispersion — Paula Ribeiro Prist, Leandro Reverberi Tambosi, Luís Filipe Mucci, Adriano Pinter, Renato Pereira De Souza, Renata De Lara Muylaert, Jonathan Roger Rhodes, César Henrique Comin, Luciando Da Fontoura Costa, Tatiana Lang D'Agostini, Juliana Telles De Deus, Mônica Pavão, Márcio Port‐Carvalho, Leila Del Castillo Saad, Maria Anice Mureb Sallum, Roberta Maria Fernandes Spinola, Jean Paul Metzger — Journal of Applied Ecology, 2022
• Gland context networks: a novel approach for improving prostate cancer identification — Rodrigo de P. Mendes, Xin Yuan, Elizabeth M. Genega, Xiaoyin Xu, Luciano da F. Costa, Cesar H. Comin — Computerized Medical Imaging and Graphics, 2021
• Quantification of retinal blood leakage in fundus fluorescein angiography in a retinal angiogenesis model — Cesar H. Comin, Demetrios I. Tsirukis, Ye Sun, Xiaoyin Xu — Scientific Reports, 2021
• Spatial distribution of graffiti types: a complex network approach — Eric K. Tokuda, Henrique F. De Arruda, Cesar H. Comin, Roberto M. Cesar, Claudio T. Silva, Luciano Da F. Costa — The European Physical Journal B, 2021
• An Exercise Mimetic Approach to Reduce Poststroke Deconditioning and Enhance Stroke Recovery — Matthew W. McDonald, Matthew S. Jeffers, Lama Issa, Anthony Carter, Allyson Ripley, Lydia M. Kuhl, Cameron Morse, Cesar H. Comin, Bernard J. Jasmin, Baptiste Lacoste, Dale Corbett — Neurorehabilitation and Neural Repair, 2021
• Classification of abrupt changes along viewing profiles of scientific articles — Ana C.M. Brito, Filipi N. Silva, Henrique F. De Arruda, Cesar H. Comin, Diego R. Amancio, Luciano Da F. Costa — Journal of Informetrics, 2021
• Contrarian effects and echo chamber formation in opinion dynamics — Henrique Ferraz De Arruda, Alexandre Benatti, Filipi Nascimento Silva, César Henrique Comin, Luciano Da Fontoura Costa — Journal of Physics: Complexity, 2021
• Vascular contributions to 16p11.2 deletion autism syndrome modeled in mice — Julie Ouellette, Xavier Toussay, Cesar H. Comin, Luciano Da F. Costa, Mirabelle Ho, María Lacalle-Aurioles, Moises Freitas-Andrade, Qing Yan Liu, Sonia Leclerc, Youlian Pan, Ziying Liu, Jean-François Thibodeau, Melissa Yin, Micael Carrier, Cameron J. Morse, Peter Van Dyken, Christopher J. Bergin, Sylvain Baillet, Christopher R. Kennedy, Marie-Ève Tremblay, Yannick D. Benoit, William L. Stanford, Dylan Burger, Duncan J. Stewart, Baptiste Lacoste — Nature Neuroscience, 2020
• Quantifying the regularity of a 3D set of points on the surface of an ellipsoidal object — Cesar H. Comin, Gavin J. Taylor, Luciano Da F. Costa — Pattern Recognition Letters, 2020
• Complex systems: Features, similarity and connectivity — Cesar H. Comin, Thomas Peron, Filipi N. Silva, Diego R. Amancio, Francisco A. Rodrigues, Luciano Da F. Costa — Physics Reports, 2020
• Comparison of Different Spike Train Synchrony Measures Regarding Their Robustness to Erroneous Data From Bicuculline-Induced Epileptiform Activity — Manuel Ciba, Robert Bestel, Christoph Nick, Guilherme Ferraz De Arruda, Thomas Peron, Comin César Henrique, Luciano Da Fontoura Costa, Francisco Aparecido Rodrigues, Christiane Thielemann — Neural Computation, 2020
• Opinion diversity and social bubbles in adaptive Sznajd networks — Alexandre Benatti, Henrique F De Arruda, Filipi Nascimento Silva, César Henrique Comin, Luciano Da Fontoura Costa — Journal of Statistical Mechanics: Theory and Experiment, 2020
• On the Relationship between City Mobility and Blocks Uniformity — Eric Tokuda, Cesar Comin, Roberto Cesar, Luciano Costa — The 5th International Electronic Conference on Entropy and Its Applications, 2019
• Malleability of complex networks — Filipi N Silva, Cesar H Comin, Luciano Da F Costa — Journal of Statistical Mechanics: Theory and Experiment, 2019
• Problem-solving using complex networks — Henrique F. De Arruda, Cesar H. Comin, Luciano Da F. Costa — The European Physical Journal B, 2019
• Connecting network science and information theory — Henrique F. De Arruda, Filipi N. Silva, Cesar H. Comin, Diego R. Amancio, Luciano Da F. Costa — Physica A: Statistical Mechanics and its Applications, 2019
• Clustering algorithms: A comparative approach — Mayra Z. Rodriguez, Cesar H. Comin, Dalcimar Casanova, Odemir M. Bruno, Diego R. Amancio, Luciano Da F. Costa, Francisco A. Rodrigues — PLOS ONE, 2019
• Morphological Neuron Classification Based on Dendritic Tree Hierarchy — Evelyn Perez Cervantes, Cesar Henrique Comin, Roberto Marcondes Cesar Junior, Luciano Da Fontoura Costa — Neuroinformatics, 2019
• Characterizing the Trabecular Bone Tissue of the Toco Toucan Bill — Cesar H. Comin, Matheus P. Viana, Barbara Henning, Sergio F. Dos Reis, Thais M.P. Dos Santos, Ricardo T. Lopes, Luciano Da F. Costa — 2018 25th IEEE International Conference on Image Processing (ICIP), 2018
• The dynamics of knowledge acquisition via self-learning in complex networks — Thales S. Lima, Henrique F. De Arruda, Filipi N. Silva, Cesar H. Comin, Diego R. Amancio, Luciano Da F. Costa — Chaos: An Interdisciplinary Journal of Nonlinear Science, 2018
• Topological characterization of world cities — G S Domingues, F N Silva, C H Comin, L Da F Costa — Journal of Statistical Mechanics: Theory and Experiment, 2018
• How integrated are theoretical and applied physics? — Henrique F. De Arruda, Cesar H. Comin, Luciano Da F. Costa — Scientometrics, 2018
• Hyperfiltration in ubiquitin C-terminal hydrolase L1-deleted mice — Naomi C. Boisvert, Chet E. Holterman, Jean-François Thibodeau, Rania Nasrallah, Eldjonai Kamto, Cesar H. Comin, Luciano da F. Costa, Anthony Carter, Richard L. Hébert, Alex Gutsol, Gregory O. Cron, Baptiste Lacoste, Douglas A. Gray, Chris R. Kennedy — Clinical Science, 2018
• The impact of Interconnecting Topologies on SOM Neural Networks — Mayra Z. Pimenta, Cesar Henrique Comin, Francisco A. Rodrigues, Luciano Da F. Costa — 2018 International Joint Conference on Neural Networks (IJCNN), 2018
• Topology and dynamics in complex networks: The role of edge reciprocity — Paulo J. P. Souza, Cesar H. Comin, Luciano Da F. Costa — EPL (Europhysics Letters), 2018
• A pattern recognition approach to transistor array parameter variance — Luciano Da F. Costa, Filipi N. Silva, Cesar H. Comin — Physica A: Statistical Mechanics and its Applications, 2018
• Negative feedback, linearity and parameter invariance in linear electronics — Luciano Da F. Costa, Filipi N. Silva, Cesar H. Comin — Electrical Engineering, 2018
• Characterizing BJTs using the Early voltage in the forward active mode — Luciano Da F. Costa, Filipi Nascimento Silva, Cesar H. Comin — International Journal of Circuit Theory and Applications, 2018
• The aPKC-CBP Pathway Regulates Post-stroke Neurovascular Remodeling and Functional Recovery — Ayden Gouveia, Matthew Seegobin, Timal S. Kannangara, Ling He, Fredric Wondisford, Cesar H. Comin, Luciano Da F. Costa, Jean-Claude Béïque, Diane C. Lagace, Baptiste Lacoste, Jing Wang — Stem Cell Reports, 2017
• Biological network border detection — Paulo E. P. Burke, Cesar H. Comin, Filipi N. Silva, Luciano Da F. Costa — Integrative Biology, 2017
• Effects of threshold on the topology of gene co-expression networks — Cynthia Martins Villar Couto, César Henrique Comin, Luciano Da Fontoura Costa — Molecular BioSystems, 2017
• Analysis of Scanning Electron Microscopy Images To Investigate Adsorption Processes Responsible for Detection of Cancer Biomarkers — Valquiria Da Cruz Rodrigues, Cesar H. Comin, Juliana Coatrini Soares, Andrey Coatrini Soares, Matias Eliseo Melendez, José Humberto T. G. Fregnani, André Lopes Carvalho, Luciano Da F. Costa, Osvaldo N. Oliveira — ACS Applied Materials & Interfaces, 2017
• Seeking maximum linearity of transfer functions — Filipi N. Silva, Cesar H. Comin, Luciano Da F. Costa — Review of Scientific Instruments, 2016
• Unveiling the relationship between structure and dynamics on modular networks — César Henrique Comin — USP Digital Library, 2016
• Data-oriented neuron classification from their parts — Evelyn Perez Cervantes, Cesar Henrique Comin, Roberto Marcondes Cesar, Luciano Da Fontoura Costa — 2016 IEEE 12th International Conference on e-Science (e-Science), 2016
• A diffusion-based approach to obtaining the borders of urban areas — Cesar Henrique Comin, Filipi Nascimento Silva, Luciano Da Fontoura Costa — Journal of Statistical Mechanics: Theory and Experiment, 2016
• Concentric network symmetry — Filipi N. Silva, César H. Comin, Thomas K. Dm. Peron, Francisco A. Rodrigues, Cheng Ye, Richard C. Wilson, Edwin R. Hancock, Luciano Da F. Costa — Information Sciences, 2016
• Temporal modulation of collective cell behavior controls vascular network topology — Esther Kur, Jiha Kim, Aleksandra Tata, Cesar H Comin, Kyle I Harrington, Luciano Da F Costa, Katie Bentley, Chenghua Gu — eLife, 2016
• Minimal paths between communities induced by geographical networks — Henrique Ferraz De Arruda, César Henrique Comin, Luciano Da Fontoura Costa — Journal of Statistical Mechanics: Theory and Experiment, 2016
• Thermodynamic characterization of networks using graph polynomials — Cheng Ye, César H. Comin, Thomas K. Dm. Peron, Filipi N. Silva, Francisco A. Rodrigues, Luciano Da F. Costa, Andrea Torsello, Edwin R. Hancock — Physical Review E, 2015
• Automated high-content morphological analysis of muscle fiber histology — Mauro Miazaki, Matheus P Viana, Zhong Yang, Cesar H Comin, Yaming Wang, Luciano Da F Costa, Xiaoyin Xu — Computers in Biology and Medicine, 2015
• A framework for evaluating complex networks measurements — Cesar H. Comin, Filipi N. Silva, Luciano Da F. Costa — EPL (Europhysics Letters), 2015
• A framework for analyzing the relationship between gene expression and morphological, topological, and dynamical patterns in neuronal networks — Henrique Ferraz De Arruda, Cesar Henrique Comin, Mauro Miazaki, Matheus Palhares Viana, Luciano Da Fontoura Costa — Journal of Neuroscience Methods, 2015
• Random walks in directed modular networks — Cesar H Comin, Mateus P Viana, Lucas Antiqueira, Luciano Da F Costa — Journal of Statistical Mechanics: Theory and Experiment, 2014
• An image processing approach to analyze morphological features of microscopic images of muscle fibers — Cesar Henrique Comin, Xiaoyin Xu, Yaming Wang, Luciano Da Fontoura Costa, Zhong Yang — Computerized Medical Imaging and Graphics, 2014
• Correlations between climate network and relief data — T. K. D. Peron, C. H. Comin, D. R. Amancio, L. Da F. Costa, F. A. Rodrigues, J. Kurths — Nonlinear Processes in Geophysics, 2014
• Sensory-Related Neural Activity Regulates the Structure of Vascular Networks in the Cerebral Cortex — Baptiste Lacoste, Cesar H. Comin, Ayal Ben-Zvi, Pascal S. Kaeser, Xiaoyin Xu, Luciano da F. Costa, Chenghua Gu — Neuron, 2014
• Archetypes and Outliers in the Neuromorphological Space — Cesar H. Comin, Julian Tejada, Matheus P. Viana, Antonio C. Roque, Luciano Da F. Costa — The Computing Dendrite, 2014
• Approximate von Neumann entropy for directed graphs — Cheng Ye, Richard C. Wilson, César H. Comin, Luciano Da F. Costa, Edwin R. Hancock — Physical Review E, 2014
• A Systematic Comparison of Supervised Classifiers — Diego Raphael Amancio, Cesar Henrique Comin, Dalcimar Casanova, Gonzalo Travieso, Odemir Martinez Bruno, Francisco Aparecido Rodrigues, Luciano Da Fontoura Costa — PLoS ONE, 2014
• Statistical physics approach to quantifying differences in myelinated nerve fibers — César H. Comin, João R. Santos, Dario Corradini, Will Morrison, Chester Curme, Douglas L. Rosene, Andrea Gabrielli, Luciano Da F. Costa, H. Eugene Stanley — Scientific Reports, 2014
• Shape, connectedness and dynamics in neuronal networks — Cesar Henrique Comin, Luciano Da Fontoura Costa — Journal of Neuroscience Methods, 2013
• Entropy and Heterogeneity Measures for Directed Graphs — Cheng Ye, Richard C. Wilson, César H. Comin, Luciano Da F. Costa, Edwin R. Hancock — Similarity-Based Pattern Recognition, 2013
• A methodology to infer gene networks from spatial patterns of expression – an application to fluorescence in situ hybridization images — Monica Guimarães Campiteli, Cesar Henrique Comin, Luciano Da Fontoura Costa, M. Madan Babu, Roberto Marcondes Cesar — Molecular BioSystems, 2013
• The relationship between structure and function in locally observed complex networks — Cesar H Comin, Matheus P Viana, Luciano Da F Costa — New Journal of Physics, 2013
• Structure and dynamics: the transition from nonequilibrium to equilibrium in integrate-and-fire dynamics — Cesar H. Comin, João L. B. Batista, Matheus P. Viana, Luciano Da F. Costa, Bruno A. N. Travençolo, Marcus Kaiser — International Journal of Bifurcation and Chaos, 2012
• The relationship between structure and function in complex networks observed locally — César Henrique Comin — USP Digital Library, 2012
• Identifying the starting point of a spreading process in complex networks — Cesar Henrique Comin, Luciano Da Fontoura Costa — Physical Review E, 2011